Genome Browsers and Tools GalterList
Owner: PAMELA SHAW
Description: Servers, tools and databases available for various species' whole genome study
Viewing: all 15 items
- 1. Comprehensive Microbial Resource (CMR) Home Page
- Collected information on all publicly available, complete prokaryotic genomes
- 2. Ensembl Genome Browser
- Search or browse the genomes of a number of mammalian and non-mammalian species.
- 3. Entrez Genome Home
- NCBI. Search the genomes of 6 classes of organisms: Archaea, Bacteria, Eukaryotae, Viruses, Viroids, and Plasmids
- 4. GOBASE - The Organelle Genome Database
- GOBASE is a taxonomically broad organelle genome database that organizes and integrates diverse data related to mitochondria and chloroplasts.
- 5. J. Craig Venter Institute (Formerly TIGR)
- Formed by a merger of The Institute for Genomic Research,The Center for the Advancement of Genomics (TCAG), The J. Craig Venter Science Foundation, The Joint Technology Center, and the Institute for Biological Energy Alternatives (IBEA), this site contains all the TIGR databases
- 6. KEGG: Kyoto Encyclopedia of Genes and Genomes
- Organizes genomic info into 4 databases: pathway, ligands, genes, and BRITE (a system and organism level functional relationship database), plus has a genome atlas
- 7. Kyushu University Definitive Haplotype Database
- Human genome-wide definitive haplotypes, determined using a collection of 100 Japanese complete hydatidiform moles (CHMs)
- 8. MIPS Plants Database
- The MIPS plant genomics group focuses on the bioinformatics of plant genomes. It developed from the Arabidopsis genome annotation group
- 9. Mitome: Mitochondrial genome database
- “ Dynamic and interactive database for comparative mitochondrial genomics in metazoan animals.”
- 10. mtDB - Human Mitochondrial Genome Database
- A complete human mitochondrial genome resource: Download mtDNA sequences, search for specific variants, find polymorphic sites
- 11. NCBI Map Viewer
- NCBI. Provides a graphical illustration of genes on a genomic map, with options for parallel comparison among species' maps.
- 12. Online Bioinformatics Resource Collection
- This is an incredibly online search engine that searches all the online bioinformatics and molecular biology resources from Nucleic Acids Research's web issues and clusters the results by useful keywords. Offered by the University of Pittsburgh's Health Sciences Library
- 13. OpenHelix: Free tutorials
- Open Helix maintains a catalog of video tutorials on a number of topics of interest to genomic researchers. These particular tutorials is free.
- 14. PSI-Nature Structural Genomics Knowledgebase
- The PSI-Nature SGKB is designed to turn the products of the Protein Structure Initiative into knowledge that is important for understanding living systems and disease. Use this site to explore the PSI's work and to stay informed about advances in structural biology and structural genomics.
- 15. UCSC Genome Browser Home
- UCSC. This site contains the reference sequence and working draft assemblies for a large collection of genomes. It also provides a portal to the ENCODE project.
Last Updated: 04/11/2013