Nucleic Acids: Sequence Searching and Alignment
Owner: PAMELA SHAW
Description: Resources and databases for nucleotide sequence and alignment
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- 1. BLAST: Basic Local Alignment Search Tool
- NCBI. The "BLAST page" offers a number of different BLAST sequence alignment tools for DNA, RNA or proteins. Use "blastn" for nucleotide BLAST
- 2. dbEST
- NCBI. dbEST is a division of GenBank that contains sequence data and other information on "single-pass" cDNA sequences, or "Expressed Sequence Tags", from a number of organisms
- 3. GenBank
- GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences
- 4. NCBI Entrez Nucleotide
- NCBI. Search for nucleotide sequences from GenBank, RefSeq and PDB. Retrieves curated and archival (non-curated) sequences from a number of sources. Also allows users to submit nucleotide records.
- 5. NCBI Reference Sequence (RefSeq)
- NCBI. Collection of curated non-redundant reference mRNA sequences within GenBank
Last Updated: 08/18/2008