Nucleic Acids: Sequence Searching and Alignment
Owner: PAMELA SHAW
Description: Resources and databases for nucleotide sequence and alignment
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- 1. Blast 2 Sequences
- This tool produces the alignment of two given sequences using BLAST engine for local alignment.
- 2. BLAST: Basic Local Alignment Search Tool
- NCBI. The "BLAST page" offers a number of different BLAST sequence alignment tools for DNA, RNA or proteins. Use "blastn" for nucleotide BLAST
- 3. DDBJ:DNA Data Bank of Japan
- Search for nucleotide sequences. This is one of the 3 databases that make up the International Nucleotide Sequence Database Collaboration
- 4. GenBank
- GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences
- 5. NCBI Entrez Nucleotide
- NCBI. Search for nucleotide sequences from GenBank, RefSeq and PDB. Retrieves curated and archival (non-curated) sequences from a number of sources. Also allows users to submit nucleotide records.
- 6. ParAlign
- CMBN Bioinformatics Group and Sencel Bioinformatics. Rapid and sensitive sequence similarity searches powered by parallel computing technology.
- 7. The EMBL Nucleotide Sequence Database
- EBI. Europe's main sequence database. Search for nucleotide sequences or submit them.
Last Updated: 08/18/2008